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A list of gene sets derived from an integrated prior knowledge network used in the NeighbourNet (NNet) framework. This list includes transcription factors (TFs), target genes, receptors, and ligands.

Usage

gene.list

Format

A list with four entries:

tfs

A character vector of transcription factor (TF) gene names. These are regulators that control gene expression.

targets

A character vector of target gene names. These genes are regulated by TFs.

receptors

A character vector of receptor gene names. These genes encode proteins that receive extracellular signals.

ligands

A character vector of ligand gene names. These genes encode signaling molecules that bind to receptors.

Source

The integrated prior knowledge network used in NNet analysis.

Details

This list is crucial for gene regulatory network (GRN) inference and upstream signaling pathway (USP) analysis in NNet.